ES-DE/external/CImg/resources/pycimg.py

114 lines
4.3 KiB
Python

#
# File : pycimg.py
# ( Python file )
#
# Description : Show how to import .cimg and .cimgz files into python (numpy).
# This file is a part of the CImg Library project.
# ( http://cimg.eu )
#
# Copyright : Antonio Albiol, Universidad Politecnica Valencia (SPAIN)
#
# In case of issues or comments contact Antonio Albiol at:
# aalbiol (at) dcom.upv.es
#
# Licenses : This file is 'dual-licensed', you have to choose one
# of the two licenses below to apply.
#
# CeCILL-C
# The CeCILL-C license is close to the GNU LGPL.
# ( http://www.cecill.info/licences/Licence_CeCILL-C_V1-en.html )
#
# or CeCILL v2.1
# The CeCILL license is compatible with the GNU GPL.
# ( http://www.cecill.info/licences/Licence_CeCILL_V2.1-en.html )
#
# This software is governed either by the CeCILL or the CeCILL-C license
# under French law and abiding by the rules of distribution of free software.
# You can use, modify and or redistribute the software under the terms of
# the CeCILL or CeCILL-C licenses as circulated by CEA, CNRS and INRIA
# at the following URL: "http://www.cecill.info".
#
# As a counterpart to the access to the source code and rights to copy,
# modify and redistribute granted by the license, users are provided only
# with a limited warranty and the software's author, the holder of the
# economic rights, and the successive licensors have only limited
# liability.
#
# In this respect, the user's attention is drawn to the risks associated
# with loading, using, modifying and/or developing or reproducing the
# software by the user in light of its specific status of free software,
# that may mean that it is complicated to manipulate, and that also
# therefore means that it is reserved for developers and experienced
# professionals having in-depth computer knowledge. Users are therefore
# encouraged to load and test the software's suitability as regards their
# requirements in conditions enabling the security of their systems and/or
# data to be ensured and, more generally, to use and operate it in the
# same conditions as regards security.
#
# The fact that you are presently reading this means that you have had
# knowledge of the CeCILL and CeCILL-C licenses and that you accept its terms.
#
import numpy as np
import zlib
import os
typesDict={'float':'float32' ,'double':'float64',
'unsigned_short':'uint16','unsigned_char':'uint8',
'int':'int32', 'short':'int16'}
def cimgread( filename ):
""" USAGE: a= cimgread(filename)
For CImg Images:
* returns a npy array in the case of cimg
* Supports compression
* It squeezes singleton dimensions. If a CImg image has dimensions (w,h,1,c)
the returned python object will have shape
a.shape --> (h,w,c)
* a(y,x,z,c) to access one element
For CImgList:
* returns a list of npy arrays
* if original CImgList has nimages, then
len(a) --> nimages
* To access one pixel of the j-th image use a[j](y,x,z,c)
"""
basename, file_extension = os.path.splitext(filename)
fa = open(filename, 'rb')
out =[]
line0 = fa.readline() #Endiannes
tiposdato=line0.split()
number_of_images=int(tiposdato[0])
datatypecimg=tiposdato[1].decode()
endiannes = tiposdato[2]
datatype = typesDict[datatypecimg];
for n in range(number_of_images):
line1 = fa.readline() # Dimensions
dimensiones = line1.split()
width = int(dimensiones[0]);
height = int(dimensiones[1]);
depth = int(dimensiones[2]);
spectrum = int(dimensiones[3]);
if file_extension == '.cimgz':
csize= int(dimensiones[4].decode()[1:])
data = fa.read(csize)
data = zlib.decompress(data)
else:
data = fa.read(width*height*depth*spectrum*dtype(datatype).itemsize)
flattened = np.frombuffer(data,dtype=datatype)
cimg=flattened.reshape((spectrum,depth,height,width))
cimg=np.squeeze(np.transpose(cimg,(2,3,1,0)))
out.append(cimg)
fa.close()
if len(out)==1:
return out[0]
return out