diff --git a/emu-configs/rpcs3/vfs.yml b/emu-configs/rpcs3/vfs.yml
index 375a6af2..4b294861 100644
--- a/emu-configs/rpcs3/vfs.yml
+++ b/emu-configs/rpcs3/vfs.yml
@@ -1,4 +1,4 @@
-$(EmulatorDir): RETRODECKHOMEDIR/bios/rpcs3/emudir/
+$(EmulatorDir): RETRODECKHOMEDIR/bios/rpcs3/
 /dev_hdd0/: $(EmulatorDir)dev_hdd0/
 /dev_hdd1/: $(EmulatorDir)dev_hdd1/
 /dev_flash/: $(EmulatorDir)dev_flash/
@@ -47,4 +47,4 @@ $(EmulatorDir): RETRODECKHOMEDIR/bios/rpcs3/emudir/
     Path: ""
     Serial: ""
     VID: ""
-    PID: ""
\ No newline at end of file
+    PID: ""
diff --git a/functions.sh b/functions.sh
index 179d94b8..cbedf1a3 100644
--- a/functions.sh
+++ b/functions.sh
@@ -1574,26 +1574,31 @@ prepare_emulator() {
         mkdir -pv "$multi_user_data_folder/$SteamAppUser/config/rpcs3/"
         cp -fr $emuconfigs/rpcs3/* "$multi_user_data_folder/$SteamAppUser/config/rpcs3/"
         # This is an unfortunate one-off because set_setting_value does not currently support settings with $ in the name.
-        sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/ps3/emudir"'^' "$multi_user_data_folder/$SteamAppUser/config/rpcs3/vfs.yml"
+        sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/rpcs3"'^' "$multi_user_data_folder/$SteamAppUser/config/rpcs3/vfs.yml"
+        set_setting_value "$multi_user_data_folder/$SteamAppUser/config/rpcs3/vfs.yml" "/games/" "$roms_folder/ps3" "rpcs3"
         dir_prep "$multi_user_data_folder/$SteamAppUser/config/rpcs3" "/var/config/rpcs3"
       else # Single-user actions
         rm -rf /var/config/rpcs3
         mkdir -pv /var/config/rpcs3/
         cp -fr $emuconfigs/rpcs3/* /var/config/rpcs3/
         # This is an unfortunate one-off because set_setting_value does not currently support settings with $ in the name.
-        sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/ps3/emudir"'^' $rpcs3vfsconf
+        sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/rpcs3"'^' "$rpcs3vfsconf"
+        set_setting_value "$rpcs3vfsconf" "/games/" "$roms_folder/ps3" "rpcs3"
+        dir_prep "$bios_folder/rpcs3/dev_hdd0/home/00000001/savedata" "$saves_folder/ps3/rpcs3"
       fi
       # Shared actions
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_hdd0"
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_hdd1"
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_flash"
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_flash2"
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_flash3"
-      mkdir -p "$bios_folder/rpcs3/emudir/dev_bdvd"
+      mkdir -p "$bios_folder/rpcs3/dev_hdd0"
+      mkdir -p "$bios_folder/rpcs3/dev_hdd1"
+      mkdir -p "$bios_folder/rpcs3/dev_flash"
+      mkdir -p "$bios_folder/rpcs3/dev_flash2"
+      mkdir -p "$bios_folder/rpcs3/dev_flash3"
+      mkdir -p "$bios_folder/rpcs3/dev_bdvd"
+      mkdir -p "$bios_folder/rpcs3/dev_usb000"
     fi
     if [[ "$action" == "postmove" ]]; then # Run only post-move commands
       # This is an unfortunate one-off because set_setting_value does not currently support settings with $ in the name.
-      sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/ps3/emudir"'^' $rpcs3vfsconf
+      sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/rpcs3"'^' "$rpcs3vfsconf"
+      set_setting_value "$rpcs3vfsconf" "/games/" "$roms_folder/ps3" "rpcs3"
     fi
   fi
   
diff --git a/global.sh b/global.sh
index 58151bb3..67c73288 100755
--- a/global.sh
+++ b/global.sh
@@ -119,6 +119,8 @@ then
   if grep -qF "cooker" <<< $hard_version; then # If newly-installed version is a "cooker" build
     set_setting_value $rd_conf "update_repo" "RetroDECK-cooker" retrodeck "options"
     set_setting_value $rd_conf "update_check" "true" retrodeck "options"
+    update_ignore=$(curl --silent "https://api.github.com/repos/XargonWan/$update_repo/releases/latest" | grep '"tag_name":' | sed -E 's/.*"([^"]+)".*/\1/')
+    set_setting_value $rd_conf "update_ignore" "$update_ignore" retrodeck "options" # Store the latest online version to ignore for future checks, as internal version and online tag version may not match up.
   fi
 
   echo "Setting config file permissions"
diff --git a/net.retrodeck.retrodeck.Configurator.desktop b/net.retrodeck.retrodeck.Configurator.desktop
index 6c5830bb..ce38bb89 100644
--- a/net.retrodeck.retrodeck.Configurator.desktop
+++ b/net.retrodeck.retrodeck.Configurator.desktop
@@ -4,7 +4,7 @@ GenericName=RetroDECK Configuration Utility
 Type=Application
 Comment=A handy tool to change common RetroDECK settings
 Icon=net.retrodeck.retrodeck
-Exec=flatpak run net.retrodeck.retrodeck --configurator
+Exec=--configurator
 Terminal=false
 StartupNotify=false
 Keywords=multi;engine;emulator;standalone;steam;deck
diff --git a/net.retrodeck.retrodeck.yml b/net.retrodeck.retrodeck.yml
index 7fd519d0..8e55936f 100644
--- a/net.retrodeck.retrodeck.yml
+++ b/net.retrodeck.retrodeck.yml
@@ -221,6 +221,15 @@ modules:
       - type: file
         url: https://github.com/stedolan/jq/releases/download/jq-1.6/jq-linux64
         sha256: af986793a515d500ab2d35f8d2aecd656e764504b789b66d7e1a0b727a124c44
+  
+  - name: yq
+    buildsystem: simple
+    build-commands:
+      - cp yq_linux_amd64 ${FLATPAK_DEST}/bin/yq
+    sources:
+      - type: file
+        url: https://github.com/mikefarah/yq/releases/download/v4.33.3/yq_linux_amd64
+        sha256: 4ee662847c588c3ef2fec8bfb304e8739e3dbaba87ccb9a608d691c88f5b64dc
 
   # ES-DE - START
   # https://gitlab.com/es-de/emulationstation-de
diff --git a/post_update.sh b/post_update.sh
index 0c944afa..4ea9580d 100644
--- a/post_update.sh
+++ b/post_update.sh
@@ -73,6 +73,7 @@ post_update() {
     # - Expose ES-DE gamelists folder to user at ~/retrodeck/gamelists
     # - Add new sections [paths] and [options] headers to retrodeck.cfg
     # - Prepackaged DOOM!
+    # - Update RPCS3 vfs file contents. migrate from old location if needed
 
     mkdir -p "$mods_folder"
     mkdir -p "$texture_packs_folder"
@@ -91,6 +92,24 @@ post_update() {
     cp -f "/app/retrodeck/rd_prepacks/doom/gamelist.xml" "/var/config/emulationstation/.emulationstation/gamelists/doom/gamelist.xml"
     mkdir -p "$media_folder/doom"
     unzip -oq "/app/retrodeck/rd_prepacks/doom/doom.zip" -d "$media_folder/doom/"
+
+    cp -f $emuconfigs/rpcs3/vfs.yml /var/config/rpcs3/vfs.yml
+    sed -i 's^\^$(EmulatorDir): .*^$(EmulatorDir): '"$bios_folder/rpcs3"'^' "$rpcs3vfsconf"
+    set_setting_value "$rpcs3vfsconf" "/games/" "$roms_folder/ps3" "rpcs3"
+    if [[ -d "$roms_folder/ps3/emudir" ]]; then # The old location exists, meaning the emulator was run at least once.
+      mkdir "$bios_folder/rpcs3"
+      mv "$roms_folder/ps3/emudir/*" "$bios_folder/rpcs3/"
+      rm "$roms_folder/ps3/emudir"
+      configurator_generic_dialog "As part of this update and due to a RPCS3 config upgrade, the files that used to exist at\n\n~/retrodeck/roms/ps3/emudir\n\nare now located at\n\n~/retrodeck/bios/rpcs3.\nYour existing files have been moved automatically."
+    fi
+    mkdir -p "$bios_folder/rpcs3/dev_hdd0"
+    mkdir -p "$bios_folder/rpcs3/dev_hdd1"
+    mkdir -p "$bios_folder/rpcs3/dev_flash"
+    mkdir -p "$bios_folder/rpcs3/dev_flash2"
+    mkdir -p "$bios_folder/rpcs3/dev_flash3"
+    mkdir -p "$bios_folder/rpcs3/dev_bdvd"
+    mkdir -p "$bios_folder/rpcs3/dev_usb000"
+    dir_prep "$bios_folder/rpcs3/dev_hdd0/home/00000001/savedata" "$saves_folder/ps3/rpcs3"
   fi
 
   # The following commands are run every time.
diff --git a/rd-submodules/retroarch b/rd-submodules/retroarch
index 717b7809..0b1cfb79 160000
--- a/rd-submodules/retroarch
+++ b/rd-submodules/retroarch
@@ -1 +1 @@
-Subproject commit 717b78093797270877ec416e58082f1c71d435d8
+Subproject commit 0b1cfb79e591e10488a3262d6b38db843c39a409
diff --git a/retrodeck.sh b/retrodeck.sh
index 6de347fe..c7447ccb 100644
--- a/retrodeck.sh
+++ b/retrodeck.sh
@@ -106,6 +106,8 @@ then
     echo "Config file's version is $version but the actual version is $hard_version"
     if grep -qF "cooker" <<< $hard_version; then # If newly-installed version is a "cooker" build
       cooker_base_version=$(echo $hard_version | cut -d'-' -f2)
+      update_ignore=$(curl --silent "https://api.github.com/repos/XargonWan/$update_repo/releases/latest" | grep '"tag_name":' | sed -E 's/.*"([^"]+)".*/\1/')
+      set_setting_value $rd_conf "update_ignore" "$update_ignore" retrodeck "options" # Store the latest online version to ignore for future checks, as internal version and online tag version may not match up.
       choice=$(zenity --icon-name=net.retrodeck.retrodeck --info --no-wrap --ok-label="Upgrade" --extra-button="Don't Upgrade" --extra-button="Fresh Install" \
       --window-icon="/app/share/icons/hicolor/scalable/apps/net.retrodeck.retrodeck.svg" \
       --title "RetroDECK Cooker Upgrade" \
@@ -131,6 +133,7 @@ then
       if grep -qF "cooker" <<< $version; then # If previously installed version was a cooker build
         set_setting_value $rd_conf "update_repo" "RetroDECK" retrodeck "options"
         set_setting_value $rd_conf "update_check" "false" retrodeck "options"
+        set_setting_value $rd_conf "update_ignore" "" retrodeck "options"
       fi
       post_update       # Executing post update script
     fi